bluesearch.widgets.mining_schema module

Implementation of the MiningSchma class.

class MiningSchema[source]

Bases: object

The mining schema for the mining widget.

add_entity(entity_type, property_name=None, property_type=None, property_value_type=None, ontology_source=None)[source]

Add a new entity to the schema.

A warning is issued for duplicate entities.

Parameters

  • entity_type (str) – The entity type, for example “CHEMICAL”.

  • property_name (str, optional) – The property name, for example “isChiral”.

  • property_type (str, optional) – The property type, for example “ATTRIBUTE”.

  • property_value_type (str, optional) – The property value type, for example “BOOLEAN”.

  • ontology_source (str, optional) – The ontology source, for example “NCIT”.

add_from_df(entity_df)[source]

Add entities from a given dataframe.

The data frame has to contain a column named “entity_type”. Any columns matching the schema columns will be processed, all other columns will be ignored.

Parameters

entity_df (pd.DataFrame) – The dataframe with new entities.

property df

Get a dataframe with all entities.

Returns

schema_df – The dataframe with all entities.

Return type

pd.DataFrame